This thesis describes several models of antihydrogen formation as well as the commissioning of the ALPHA antihydrogen during the 2006 Antiproton Decelerator (AD) physics run. Three models are given to describe the short-time production of antihydrogen, including the Simple Temperature Dependant Model, Inverse Velocity Model, and Scaled Inverse Velocity Model. All three models are compared to results from the ATHENA experiment. After an introduction to the ALPHA apparatus and some of the techniques used to produce antihydrogen the commissioning process is described, focusing on the optimization of the antiproton capture, cooling, and manipulation. Also included is an appendix describing in detail the ALPHA data acquisition system as of the end of the 2006 physics run

Richard A. Hydomako